2008 Mathura VS, Paris D, Ait-ghezala G, Gupta P, Volmar CH, Mullan M. 2008 “A vector method for comparison of RNA and protein expression levels of cytokines upon CD40L treatment of microglia.” International J Integrative Biology 2(2), 95-99 Patel NS, Quadros A, Brem S, Wotoczek-Obadia M, Mathura VS, Laporte V, Mullan M, Paris D. 2008 “Potent anti-angiogenic motifs within Alzheimer’s beta-amyloid peptide” Amyloid 15:5-19 2007 Poon HF, Abdullah L, Reed J, Doore SM, Laird C, Mathura VS, Mullan M, Crawford F. 2007 “Improving image analysis in 2DGE-based redox proteomics by labeling protein carbonyl with fluorescent hydroxylamine” Biol Proced Online. 9:65-72 Mathura VS, Rangareddy M, Gupta P, Mullan M. 2007 “CliniProteus: A flexible clinical trials information management system” Bioinformation 2:143-165 Crawford F, Wood M, Ferguson S, Mathura VS, Faza B, Wilson S, Fan T, O’Steen B, Ait-Ghezala G, Hayes R, Mullan M. 2007 “Genomic analysis of response to traumatic brain injury in a mouse model of Alzheimer's disease (APPsw)” Mol Brain Res. 1185:45-58 Abdullah L, Paris D, Luis C, Quadros A, Parrish L, Valdez L, Keegan A, Mathura VS, Crawford F and Mullan M. 2007 “The influence of diagnosis, intra- and inter-person variability on Serum and Plasma A-beta levels” Neuroscience Letters 428:53-58 Ivey R, Paris D, Mullan M and Mathura VS 2007 “Novel peptide aggregation prediction based on physico-chemical properties” Structure based Design: Sophisticated approaches to Drug Discovery, Boston. 2006 Crawford FC, Wood ML, Wilson SE, Mathura VS, Hollen TR, Geall F, Kolippakkam DN, Mullan MJ. 2006“Cocaine induced inflammatory response in Human Neuronal Progenitor Cells” J Neurochemistry 97:662-674 Midoro-Horiuti T, Schein CH, Mathura VS, Braun W, Czerwinski EW, Togawa A, Kondo Y, Oka T, Watanabe M, Goldblum RM. 2006 " Structural basis for epitope sharing between group 1 allergens of cedar pollen" Molecular Immunology 43:509-518 Mathura VS, Kolippakkam D, Poon F, Berhane B, Ivey R, Mullan M, Crawford F. 2006 “An Integrated proteomics workflow and information management system” Society for Neuroscience Annual Meeting, Atlanta, GA Patel NS, Quadros A, Brem S, Wotoczek-Obadia M, Mathura VS, Paris D, Mullan M. 2006 “Potent inhibition of angiogenesis by short fragments of Abeta peptides” Society for Neuroscience Annual Meeting, Atlanta, GA Ivey RA, Berhane B, Wood M, Mathura VS, Mullan M and Crawford F. 2006 “Proteomic studies of synaptosomes from cocaine-reward conditioned mice” Society for Neuroscience Annual Meeting, Atlanta, GA 2005 Horiuti TM, Schein CH, Mathura VS et al. 2005 " Structural basis for epitope sharing between group 1 allergens of cedar pollen" Molecular Immunology (In press) Mathura VS, Kolippakkam DN. 2005 "APDbase:Amino acid physical-chemical property database" Bioinformation 1:2-3 Mathura VS et al. 2005 "Model of Alzheimer's disease peptide amyloid-beta based on RNA binding protein" Biophysical Biochem. Res. Comm. 332: 585-592 Patel N, Paris D, Mathura VS, Quadros A, Crawford F, Mullan M. 2005 "Inflammatory cytokine levels correlate with amyloid load in transgenic mouse model of Alzheimer's disease" Neuroinflammation 2:9 Paris D, Ait-Ghezala G, Mathura VS, Patel N, Quadros A, Laporte V, Mullan M. 2005 "Anti-angiogenic activity of the mutant amyloid beta peptide on human brain microvascular endothelial cells" Brain Research Molecular Brain Research 136:212-230 Zhanhua C, Gan JG, Lei L, Mathura VS, Sakharkar MK, Kangueane P. 2005 "Identification of critical heterodimer protein interface parameters by multi-dimensional scaling in Euclidean space" Frontiers in Bioscience 10:844-852 Mathura V, Kolippakkam D, Crawford F and Mullan MJ 2005 GEMAT: Genomics Experiment Management and Analysis Tool ISMB, Detroit. Ait-Ghezala G, Laporte V, Volmar CH, Mathura V et al. 2005 CD40 Microglial activation, APP processing, Tau phosphorylation and Alzheimers disease Veterans Hospital Research Day, Tampa. 2004 Ivanciuc O*, Oezguen N*, Mathura VS*, Schein CH, Xu Y, Braun W. 2004 Using property based sequence motifs and 3D modeling to determine structure and functional regions of proteins Currents in Medicinal Chemistry 11:583-593 Sakharkar MS, Chow VT, Chaturvedi I, Mathura VS, Shapshak P, Kangueane P. 2004 "A report on single exon genes (SEG) in eukaryotes" Frontiers in Bioscience 9:3262-3267 Schein CH, Zhou B, Oezguen N, Mathura VS, Braun W. 2004 "Molego based definition of the architecture and specificity of metal binding sites" Proteins: Structure, Function and Bioinformatics 58:200-210 Das A, Rajagopalan L, Mathura VS, Rigby SJ, Mitra S, Hazra TK. 2004 "Identification of zinc finger binding domain in Human NEIL (Nei like)-2 protein" J Biological Chemistry 279:47132-47138 Mathura V et al. 2004 "PWIMS1.0: Proteomics workflow and information management" Neuroscience Conference, San Diego Wang H, Crawford F, Mathura V, Geall F, Wilson S, Kolippakkam D, Mullan M. 2004 Multidimensional proteomic analysis of cellular response to Cocaine treatment Neuroscience Conference, San Diego Crawford F, Wang H, Mathura V, Geall F, Wilson S, Kolippakkam D, Mullan M. 2004 Genomic and Proteomics responses to drug abuse Neuroscience Conference, San Diego Paris D, Ait-Ghezala G, Mathura V et al. 2004 Anti-angiogenic activity of the mutant dutch a peptide Neuroscience Conference, San Diego Ait-Ghezala G, Mathura V et al. 2004 Genomic response: human and murine microglia activation following CD40L treatment Neuroscience Conference, San Diego Zhou B, Schein CH, Mathura VS and Braun W. 2004 PCPMer: A New Parallel Software Tool for Efficient Data Mining and Functional Annotation of Genomic Sequence Databases Keck computational biology/HAMBP Annual Research Conference, NASA Hilton, Clear Lake, TX

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